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Bioinformation

Biology

Institute of Natural and Applied Sciences
Second Cycle (Master's Degree)
Course Unit Title Course Unit Code Type of Course Unit Level of Course Unit Year of Study Semester ECTS Credits
Bioinformation BIO529 Elective Master's degree 1 Spring 8

Name of Lecturer(s)

Prof. Dr. Halim Aytekin ERGÜL

Learning Outcomes of the Course Unit

1) DNA and gene data banks
2) programs and uses via the Internet (online) accessed on bioinformatics
3) DNA array transducers
4) primarily to design programs
5) DNA sequence alignment (alignment)
6) BLAST sequence similarity with the program of research
7) microarray applications
8) programs and statistical methods used for analysis of DNA sequence
9) mid term exam
10) Arlequin
11) DnaSP
12) PHYLIP
13) MEGA
14) SplitsTree
15) Bioedit
16) Final exam

Program Competencies-Learning Outcomes Relation

  Program Competencies
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
Learning Outcomes
1 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation No relation High No relation No relation High No relation Low Low
2 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation No relation High No relation No relation High No relation Low Low
3 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation High No relation No relation No relation High No relation Low Low
4 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation High No relation No relation No relation High No relation Low Low
5 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation High No relation No relation No relation High No relation Low Low
6 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation High No relation No relation No relation High No relation Low Low
7 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation High No relation No relation No relation High No relation Low Low
8 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation High No relation No relation No relation High No relation Low Low
9 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation High No relation No relation No relation High No relation Low Low
10 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation High No relation No relation No relation High No relation Low Low
11 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation High No relation No relation No relation High No relation Low Low
12 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation High No relation No relation No relation High No relation Low Low
13 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation High No relation No relation No relation High No relation Low Low
14 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation High No relation No relation No relation High No relation Low Low
15 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation High No relation No relation No relation High No relation Low Low
16 Low No relation No relation No relation No relation No relation No relation No relation No relation No relation Middle High No relation No relation No relation No relation High No relation No relation No relation No relation High No relation No relation No relation High No relation Low Low

Mode of Delivery

Face to Face

Prerequisites and Co-Requisites

None

Recommended Optional Programme Components

Genetic, Molecular Biology, Biotechnology

Course Contents

DNA and gene data banks, access to it and use, programs and use via the Internet (online) accessed, and the use of DNA array transducers, primarily to design programs, DNA sequence alignment (alignment), BLAST sequence similarity with the program of research, microarray applications. And programs in statistical methods used for analysis of DNA sequence: Bioedit, Arlequin, DnaSP, PHYLIP, MEGA, SplitsTree

Weekly Schedule

1) DNA and gene data banks
2) access to DNA and gene data banks and their uses,
3) programs and use via the Internet (online) accessed,
4) DNA array transducers
5) primarily to design programs
6) DNA sequence alignment (alignment),
7) midterm exam
8) Midterm examination/Assessment
9) microarray applications
10) Bioedit,
11) Arlequin
12) DnaSP
13) Phylip
14) MEGA
15) SplitsTree
16) Final examination

Recommended or Required Reading

Planned Learning Activities and Teaching Methods

1) Lecture
2) Discussion
3) Demonstration
4) Group Study
5) Problem Solving


Assessment Methods and Criteria

Contribution of Semester Studies to Course Grade

40%
 

Number

Percentage

Semester Studies

Quiz

1

60%

Midterm Examination

1

40%
 

Contribution of Final Examination to Course Grade

60%

Total

100%

Language of Instruction

Turkish

Work Placement(s)

Not Required